Preheat oven to 350°F. Line a 12 cup muffin tin with paper liners and set aside. the zest of 1 lemon, and set aside.
In a medium-sized bowl, add flour, baking powder, baking soda, and salt; set aside. In a separate bowl combine sour cream, milk, and 2 Tbsp lemon juice, whisking to combine; set aside.
Place blueberries in a small bowl and toss with remaining 1 Tbsp lemon jucie and 2 Tbsp flour. Set aside.
In the bowl of a stand mixer fitted with the paddle attachment, beat butter until smooth and creamy. Add the sugar and beat until well combined. Add in the egg and egg yolk, and beat until combined.
Add half of the flour mixture, and beat until just combined. Add half of the sour cream mixture, and beat until just combined. Repeat this process with the flour and sour cream mixtures.
Using a rubber spatula or spoon, gently fold in the blueberries and lemon zest until just combined. Add mixture to prepared cupcake pan (fill about 3/4 of the way full), and bake 18 to 20 minutes or until a toothpick inserted into the middle of a cupcake comes out clean).